03/09/2022
The new RNAseq data analysis pipeline assessment was completed successfully. write bash script for RNAseq downloading from NCBI using SRA toolkit, mapping reads using bowtie2, assembly and quantification using stringtie and downstream analysis in R. All scripts are automated using Python and generate arguments for specific scripts. That is something called a "full stack bioinformatic developer." The pipeline will be available soon on our GitHub repository.
I also provide bioinformatics services in the following domain:
• NGS data analysis (all subdomains)
• Bioinformatics development (Python and Rshiny)
• Bioinformatic scripting (Python, R language, bash scripting)
• Drug Designing
• MD simulation (100ns in just 8 hours or 100ns in just 2 hours)
• Metagenomics
• Cancer genomics
• Machine learning